[Bug 19365] New: link_bibs_to_authorities.pl doesn' t work with Elasticsearch

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[Bug 19365] New: link_bibs_to_authorities.pl doesn' t work with Elasticsearch

bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

            Bug ID: 19365
           Summary: link_bibs_to_authorities.pl doesn't work with
                    Elasticsearch
 Change sponsored?: ---
           Product: Koha
           Version: master
          Hardware: All
                OS: Linux
            Status: NEW
          Severity: blocker
          Priority: P5 - low
         Component: Searching - Elasticsearch
          Assignee: [hidden email]
          Reporter: [hidden email]

We need to run the script on daily basis to link bibliographic records to
matching authority records. We know this worked with Zebra. But with
Elasticsearch it don't.

Our current system preference settings is the following:

AutoCreateAuthorites: no.
BiblioAddsAuthorities: no.
UseAuthoritiesForTracing: yes.
CatalogModuleRelink: yes.
LinkerKeepStale: yes.
LinkerModule: Default.
LinkerOptions: broader_headings
LinkerRelink: yes

In the future we want to AutoCreateAuthorites when matching authority headings
does not exist.

The link_bibs_to_authorities.pl runs normally with no errors but no
bibliographic records are linked to matching authority records. Here is tha
last reports:

Bib authority heading linking report
=======================================================
Linker module:                          C4::Linker::Default
Run started at:                         09/24/17 06:25:04
Run ended at:                           09/25/17 07:53:13
Total run time:                         91688923 ms
Number of bibs checked:                 654037
Number of bibs modified:                0
Number of bibs with errors:             0
Number of headings linked:              0
Number of headings unlinked:            178717
Number of headings fuzzily linked:      1598619

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Jonathan Druart <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
           Severity|blocker                     |major
                 CC|                            |[hidden email]-c
                   |                            |ommunity.org,
                   |                            |[hidden email]

--- Comment #1 from Jonathan Druart <[hidden email]> ---
This is not blocker, ES is not considered as stable yet.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
                 CC|                            |[hidden email]
           Assignee|[hidden email]-commun |[hidden email]
                   |ity.org                     |

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
         Depends on|                            |18825


Referenced Bugs:

https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=18825
[Bug 18825] Elasticsearch - Update default authority mappings
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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #2 from Ere Maijala <[hidden email]> ---
Created attachment 71109
  -->
https://bugs.koha-community.org/bugzilla3/attachment.cgi?id=71109&action=edit
Bug 19365 - link_bibs_to_authorities.pl doesn't work with Elasticsearch

Fix several issues with the Elasticsearch code and optimize it to be usable.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |Needs Signoff

--- Comment #3 from Ere Maijala <[hidden email]> ---
Attached patch provides a slew of fixes and optimizations to the Elasticsearch
code and related linking functionality.

The optimizations are crucial for a usable process. On my development machine I
could only achieve speed of about 1 record per second before the changes. After
that it can handle 10-20 modified records and 100 checked records per second.
Additionally, avoiding creating a new indexer or searcher every time it's used
avoids crashing after a few thousand records due to file handles being
exhausted in the Catmandu or Elasticsearch modules.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
  Attachment #71109|0                           |1
        is obsolete|                            |

--- Comment #4 from Ere Maijala <[hidden email]> ---
Created attachment 71114
  -->
https://bugs.koha-community.org/bugzilla3/attachment.cgi?id=71114&action=edit
Bug 19365 - link_bibs_to_authorities.pl doesn't work with Elasticsearch

Fix the copyrightdate cast when it's empty.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Nick Clemens <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
  Attachment #71109|1                           |0
        is obsolete|                            |

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #5 from Nick Clemens <[hidden email]> ---
Ere, this patch looks good at a first read through, can you provide a test plan
for the linker? I am not so familiar with this tool.  

I un-obsoleted the first patch, squashing the followup would be good too

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #6 from Ere Maijala <[hidden email]> ---
I have biblios and authorities imported from another ILS so it's a perfect
place to test the linking, but it's difficult without proper authority records.


To test it properly you need biblio and authority data. You might get away with
enabling AutoCreateAuthorities and BiblioAddsAuthorities so that authorities
are created in the process. Then run "link_bibs_to_authorities.pl -v -l" twice
and observe the results. Another option would be to import authorities first
e.g. from LoC.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Brendan Gallagher <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|Needs Signoff               |Failed QA
                 CC|                            |[hidden email]
                   |                            |m

--- Comment #7 from Brendan Gallagher <[hidden email]> ---
I was able to run my linker with zebra enabled (check)

Switched to Elastic Search in system preferences.  Applied this patch.
Confirmed that I can search in Elastic search.  

Run link_bibs_to_authorities.pl -v -l - failed on first record.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #8 from Ere Maijala <[hidden email]> ---
How did it fail? Did you rebuild the authority index too?

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #9 from Brendan Gallagher <[hidden email]> ---
Yes - reindex auths and the linker failed on the first one.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #10 from Ere Maijala <[hidden email]> ---
What's the error? Or did it just not find a match? Did you notice this depends
on bug 18825? Without proper mappings it's not going to work correctly.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #11 from Brendan Gallagher <[hidden email]> ---
yes followed all the way through dependencies :)

here is the error

Can't locate object method "field" via package "<?xml version="1.0"
encoding="UTF-8"?>
<record xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns="http://www.loc.gov/MARC21/slim"
xsi:schemaLocation="http://www.loc.gov/MARC21/slim
http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd">

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #12 from Ere Maijala <[hidden email]> ---
I'm unable to reproduce, but it might be something specific to settings and my
environment. Can you find the file and line where the error happens? Thanks!

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|Failed QA                   |Needs Signoff

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
  Attachment #71109|0                           |1
        is obsolete|                            |
  Attachment #71114|0                           |1
        is obsolete|                            |

--- Comment #13 from Ere Maijala <[hidden email]> ---
Created attachment 73382
  -->
https://bugs.koha-community.org/bugzilla3/attachment.cgi?id=73382&action=edit
Bug 19365 - link_bibs_to_authorities.pl doesn't work with Elasticsearch

Fix several issues with the Elasticsearch code and optimize it to be usable.

Test plan:

1. To test it properly you need biblio and authority data. You might get away
with enabling AutoCreateAuthorities and BiblioAddsAuthorities so that
authorities are created in the process. Another option would be to import
authorities first e.g. from LoC.
2. Make sure the authority index has been properly created with
"misc/search_tools/rebuild_elastic_search.pl -a -d"
3. Run "misc/link_bibs_to_authorities.pl -v -l" twice and observe the results.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #14 from Ere Maijala <[hidden email]> ---
I rebased the patch on current master. Still couldn't get it to fail.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #15 from Nick Clemens <[hidden email]> ---
It looks like you are touching some of the same code adjusted in bug 19604 -
can you take a look there and make any comments and then rebase this on top of
that bug?

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
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Ere Maijala <[hidden email]> changed:

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----------------------------------------------------------------------------
             Status|Needs Signoff               |ASSIGNED

--- Comment #16 from Ere Maijala <[hidden email]> ---
Oh, thanks for pointing that one out. I think I'll wait to get some of the
fixes into master, this is getting a bit too complicated otherwise!

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

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Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
           See Also|                            |https://bugs.koha-community
                   |                            |.org/bugzilla3/show_bug.cgi
                   |                            |?id=20664

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

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Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
           See Also|                            |https://bugs.koha-community
                   |                            |.org/bugzilla3/show_bug.cgi
                   |                            |?id=20244

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

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https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Sally Healey <[hidden email]> changed:

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                 CC|                            |sally.healey@cheshireshared
                   |                            |services.gov.uk

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365
Bug 19365 depends on bug 18825, which changed state.

Bug 18825 Summary: Elasticsearch - Update default authority mappings
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=18825

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|Pushed to Master            |RESOLVED
         Resolution|---                         |FIXED

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
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https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #17 from Nick Clemens <[hidden email]> ---
This one is cleared to move ahead, any chance of a rebase Ere?

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
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https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

--- Comment #18 from Ere Maijala <[hidden email]> ---
Yes, I'll see what I can do. I'll probably have to rework this significantly to
base this on bug 19893.

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
         Depends on|                            |19893


Referenced Bugs:

https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19893
[Bug 19893] Alternative optimized indexing for Elasticsearch
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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
In reply to this post by bugzilla-daemon
https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

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  Attachment #73382|0                           |1
        is obsolete|                            |

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[Bug 19365] link_bibs_to_authorities.pl doesn't work with Elasticsearch

bugzilla-daemon
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https://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=19365

Ere Maijala <[hidden email]> changed:

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             Status|ASSIGNED                    |Needs Signoff

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